Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Inherited Disease
  • Published:

Repair of CFTR mRNA by spliceosome-mediated RNA trans-splicing

Abstract

Most messenger RNA precursors (pre-mRNA) undergo cis-splicing in which introns are excised and the adjoining exons from a single pre-mRNA are ligated together to form mature messenger RNA. This reaction is driven by a complex known as the spliceosome. Spliceosomes can also combine sequences from two independently transcribed pre-mRNAs in a process known as trans-splicing. Spliceosome-mediated RNA trans-splicing (SMaRT) is an emerging technology in which RNA pre-therapeutic molecules (PTMs) are designed to recode a specific pre-mRNA by suppressing cis-splicing while enhancing trans-splicing between the PTM and its pre-mRNA target. This study examined the feasibility of SMaRT as a potential therapy for genetic diseases to correct mutations using cystic fibrosis (CF) as an example. We used several versions of a cystic fibrosis transmembrane conductance regulator (CFTR) mini-gene expressing mutant (ΔF508) pre-mRNA targets and tested this against a number of PTMs capable of binding to the CFTR target intron 9 and trans-splicing in the normal coding sequences for exons 10–24 (containing F508). When 293T cells were cotransfected with both constructs, they produced a trans-spliced mRNA in which normal exon 10–24 replaced mutant exon 10. To test whether SMaRT produced mature CFTR protein, proteins were immunoprecipitated from lysates of co- transfected cells and detected by Western blotting and PKA-phosphorylation. Tryptic phosphopeptide mapping confirmed the identity of CFTR. This proof-of-concept study demonstrates that exon replacement by SMaRT can repair an abnormal pre-mRNA associated with a genetic disease.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7
Figure 8

Similar content being viewed by others

References

  1. Akopian AN et al. Trans-splicing of a voltage-gated sodium channel is regulated by nerve growth factor FEBS Lett 1999 445: 177–182

    Article  CAS  Google Scholar 

  2. Kawasaki T et al. RNA maturation of the rice SPK gene may involve trans-splicing Plant J 1999 18: 625–632

    Article  CAS  Google Scholar 

  3. Li BL et al. Human acyl-CoA:cholesterol acyltransferase-1 (ACAT-1) gene organization and evidence that the 4.3-kilobase ACAT-1 mRNA is produced from two different chromosomes J Biol Chem 1999 274: 11060–11071

    Article  CAS  Google Scholar 

  4. Zaphiropoulos PG . RNA molecules containing exons originating from different members of the cytochrome P450 2C gene subfamily (CYP2C) in human epidermis and liver Nucleic Acids Res 1999 27: 2585–2590

    Article  CAS  Google Scholar 

  5. Caudevilla C et al. Natural trans-splicing in carnitine octanoyltransferase pre-mRNAs in rat liver Proc Natl Acad Sci USA 1998 95: 12185–12190

    Article  CAS  Google Scholar 

  6. Malek O, Brennicke A, Knoop V . Evolution of trans-splicing plant mitochondrial introns in pre-Permian times Proc Natl Acad Sci USA 1997 94: 553–558

    Article  CAS  Google Scholar 

  7. Davis RE et al. RNA trans-splicing in flatworms J Biol Chem 1995 270: 21813–21819

    Article  CAS  Google Scholar 

  8. Eul J, Graessmann M, Graessmann A . Experimental evidence for RNA trans-splicing in mammalian cells EMBO J 1995 14: 3226–3235

    Article  CAS  Google Scholar 

  9. Rajkovic A, Davis RE, Simonsen JN, Rottman FM . A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoni Proc Natl Acad Sci USA 1990 87: 8879–8883

    Article  CAS  Google Scholar 

  10. Puttaraju M et al. Spliceosome-mediated RNA trans-splicing as a tool for gene therapy Nature Biotech 1999 17: 246–252

    Article  CAS  Google Scholar 

  11. Davis PB, Drumm M, Konstan MW . Cystic fibrosis Am J Respir Crit Care Med 1996 154: 1229–1256

    Article  CAS  Google Scholar 

  12. Welsh MJ, Smith AE . Molecular mechanism of CFTR channel dysfunction in cystic fibrosis Cell 1993 73: 1251–1254

    Article  CAS  Google Scholar 

  13. Zielenski J, Tsui L-C . Cystic fibrosis: genotypic and phenotypic variations Annu Rev Genet 1995 29: 777–807

    Article  CAS  Google Scholar 

  14. Riordan JR et al. Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA Science 1989 245: 1066–1072

    Article  CAS  Google Scholar 

  15. Kartner N et al. Mislocalization of delta F508 CFTR in cystic fibrosis sweat gland Nature Genet 1992 1: 321–327

    Article  CAS  Google Scholar 

  16. Olsen JC et al. Correction of the apical membrane chloride permeability defect in polarized cystic fibrosis airway epithelia following retroviral-mediated gene transfer Hum Gene Ther 1992 3: 253–266

    Article  CAS  Google Scholar 

  17. Johnson LG et al. Efficiency of gene transfer for restoration of normal airway epithelial function in cystic fibrosis Nat Genet 1992 2: 21–25

    Article  CAS  Google Scholar 

  18. Rich DP et al. Expression of cystic fibrosis transmembrane conductance regulator corrects defective chloride channel regulation in cystic fibrosis airway epithelial cells Nature 1990 347: 358–363

    Article  CAS  Google Scholar 

  19. Engelhardt JF, Wilson JM . Gene therapy of cystic fibrosis lung disease J Pharm Pharmacol 1992 1: 165–167

    Google Scholar 

  20. Engelhardt JF, Yankaskas JR, Wilson JM . In vivo retroviral gene transfer into human bronchial epithelia of xenografts J Clin Invest 1992 90: 2598–2607

    Article  CAS  Google Scholar 

  21. Hyde SC . Correction of the ion transport defect in cystic fibrosis transgenic mice by gene therapy Nature 1993 362: 250–255

    Article  CAS  Google Scholar 

  22. Grubb BR . Inefficient gene transfer by adenovirus vector to cystic fibrosis airway epithelia of mice and humans Nature 1994 371: 802–806

    Article  CAS  Google Scholar 

  23. Harvey B-G et al. Airway epithelial CFTR mRNA expression in cystic fibrosis patients after repetitive administration of a recombinant adenovirus J Clin Invest 1999 104: 1245–1255

    Article  CAS  Google Scholar 

  24. Zabner J et al. Adenovirus-mediated gene transfer transiently corrects the chloride transport defect in nasal epithelia of patients with cystic fibrosis Cell 1993 75: 207–216

    Article  CAS  Google Scholar 

  25. Wagner JA et al. Efficient and persistent gene transfer of AAV-CFTR in maxillary sinus Lancet 1998 351: 1702–1703

    Article  CAS  Google Scholar 

  26. Cohn J et al. Characterization of the cystic fibrosis transmembrane conductance regulator in a colonocyte cell line Proc Natl Acad Sci USA 1992 89: 2340–2344

    Article  CAS  Google Scholar 

  27. Yang Y et al. Molecular basis of defective anion transport in L cells expressing recombinant forms of CFTR Hum Mol Genet 1993 2: 1253–1261

    Article  CAS  Google Scholar 

  28. Zarrinkar PP, Sullenger BA . Optimizing the substrate specificity of a group I intron ribozyme Biochemistry 1999 38: 3426–3432

    Article  CAS  Google Scholar 

  29. Kren BT, Metz R, Kumar R, Steer CJ . Gene repair using chimeric RNA/DNA oligonucleotides Semin Liver Dis 1999 19: 93–104

    Article  CAS  Google Scholar 

  30. Friedman KJ et al. Correction of aberrant splicing of the cystic fibrosis transmembrane conductance regulator (CFTR) gene by antisense oligonucleotides J Biol Chem 1999 274: 36193–36199

    Article  CAS  Google Scholar 

  31. Goncz KK, Kunzelmann K, Xu Z, Gruenert DC . Targeted replacement of normal and mutant CFTR sequences in human airway epithelial cells using DNA fragments Hum Mol Genet 1998 7: 1913–1919

    Article  CAS  Google Scholar 

  32. Flotte TR, Carter BJ . Adeno-associated virus vectors for gene therapy of cystic fibrosis Meth Enzymol 1998 292: 717–732

    Article  CAS  Google Scholar 

  33. Zhang L et al. Efficient expression of CFTR function with adeno-associated virus vectors that carry shortened CFTR genes Proc Natl Acad Sci USA 1998 95: 10158–10163

    Article  CAS  Google Scholar 

  34. Wang D et al. Efficient CFTR expression from AAV vectors packaged with promoters – the second generation Gene Therapy 1999 6: 667–675

    Article  CAS  Google Scholar 

  35. Chow YH et al. Development of an epithelium-specific expression cassette with human DNA regulatory elements for transgene expression in lung airways Proc Natl Acad Sci USA 1997 94: 14695–14700

    Article  CAS  Google Scholar 

  36. Schiavi SC et al. Biosynthetic and growth abnormalities are associated with high-level expression of CFTR in heterologous cells Am J Physiol 1996 270: C341–C351

    Article  CAS  Google Scholar 

  37. Mohammad-Panah R et al. Hyperexpression of recombinant CFTR in heterologous cells alters its physiological properties Am J Physiol 1998 274: C310–C318

    Article  CAS  Google Scholar 

  38. Mathews DH, Sabina J, Zuker M, Turner DH . Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure J Mol Biol 1999 288: 911–940

    Article  CAS  Google Scholar 

Download references

Acknowledgements

MAG-B is also Associate Professor of Genetics, Microbiology and Medicine at Duke University Medical Center. This work was funded by Proteome Sciences, plc, in the United Kingdom, and by an SBIR NIH grant (No. 1 R43 DK56526-01). Additional support was provided by a NIH R01 grant (1R01-DK54023). We wish to thank Richard C Boucher, Larry G Johnson, and R Jude Samulski (Centers of Cystic Fibrosis and Pulmonary Research, and of Gene Therapy, UNC-Chapel Hill, Chapel Hill, NC, USA) for helpful suggestions. We also wish to thank Russell Nugent for proofreading the manuscript.

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Mansfield, S., Kole, J., Puttaraju, M. et al. Repair of CFTR mRNA by spliceosome-mediated RNA trans-splicing. Gene Ther 7, 1885–1895 (2000). https://doi.org/10.1038/sj.gt.3301307

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/sj.gt.3301307

Keywords

This article is cited by

Search

Quick links