[HTML][HTML] Eleven grand challenges in single-cell data science
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …
Conserved cell types with divergent features in human versus mouse cortex
Elucidating the cellular architecture of the human cerebral cortex is central to understanding
our cognitive abilities and susceptibility to disease. Here we used single-nucleus RNA-…
our cognitive abilities and susceptibility to disease. Here we used single-nucleus RNA-…
Deepeyes: Progressive visual analytics for designing deep neural networks
Deep neural networks are now rivaling human accuracy in several pattern recognition
problems. Compared to traditional classifiers, where features are handcrafted, neural networks …
problems. Compared to traditional classifiers, where features are handcrafted, neural networks …
An objective comparison of cell-tracking algorithms
We present a combined report on the results of three editions of the Cell Tracking Challenge,
an ongoing initiative aimed at promoting the development and objective evaluation of cell …
an ongoing initiative aimed at promoting the development and objective evaluation of cell …
3-D active appearance models: segmentation of cardiac MR and ultrasound images
SC Mitchell, JG Bosch, BPF Lelieveldt… - IEEE transactions on …, 2002 - ieeexplore.ieee.org
A model-based method for three-dimensional image segmentation was developed and its
performance assessed in segmentation of volumetric cardiac magnetic resonance (MR) …
performance assessed in segmentation of volumetric cardiac magnetic resonance (MR) …
[HTML][HTML] Comparative cellular analysis of motor cortex in human, marmoset and mouse
The primary motor cortex (M1) is essential for voluntary fine-motor control and is functionally
conserved across mammals 1 . Here, using high-throughput transcriptomic and epigenomic …
conserved across mammals 1 . Here, using high-throughput transcriptomic and epigenomic …
[HTML][HTML] Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease
DP Shamonin, EE Bron, BPF Lelieveldt… - Frontiers in …, 2014 - frontiersin.org
Nonrigid image registration is an important, but time-consuming task in medical image analysis.
In typical neuroimaging studies, multiple image registrations are performed, ie, for atlas-…
In typical neuroimaging studies, multiple image registrations are performed, ie, for atlas-…
A new cluster validity index for the fuzzy c-mean
In this paper a new cluster validity index is introduced, which assesses the average
compactness and separation of fuzzy partitions generated by the fuzzy c-means algorithm. To …
compactness and separation of fuzzy partitions generated by the fuzzy c-means algorithm. To …
Multistage hybrid active appearance model matching: segmentation of left and right ventricles in cardiac MR images
SC Mitchell, BPF Lelieveldt… - … on medical imaging, 2001 - ieeexplore.ieee.org
A fully automated approach to segmentation of the left and right cardiac ventricles from
magnetic resonance (MR) images is reported. A novel multistage hybrid appearance model …
magnetic resonance (MR) images is reported. A novel multistage hybrid appearance model …
Nonrigid image registration using multi-scale 3D convolutional neural networks
In this paper we propose a method to solve nonrigid image registration through a learning
approach, instead of via iterative optimization of a predefined dissimilarity metric. We design a …
approach, instead of via iterative optimization of a predefined dissimilarity metric. We design a …