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FIGURE 2. (A) Nucleotide sequence (in 5' to 3' orientation) of HD-PNA is bordered on amino terminus by biotin (bio) residue and by tyrosine (Y) and lysine (K) residues at carboxyl terminus. There are 5 linkers (designated O) flanking nucleotide sequence. Complementary nucleotide sequence of HD target mRNA (in 5' to 3' orientation) is shown, and methionine initiation codon (ATG) is underlined. HD exon-1 sequence is downstream of T3 RNA polymerase promoter (left solid box denoted by arrow), which allows for in vitro transcription of HD exon-1 mRNA. (B) Combined in vitro transcription/translation assays resulted in formation of 3H-labeled exon-1 huntingtin protein that was precipitated by TCA. Translation of HD exon-1 protein was inhibited in dose response by either PO-ODN (III) or by PNA. (C) RNase protection assay shows formation of HD mRNA protected fragment after complete nuclease digestion, because of hybridization of biotinylated HD PNA to huntingtin exon-1 mRNA (lane 2). Conjugation of antisense PNA to mAb-SA transport vector does not inhibit the hybridization of PNA to target mRNA, based on formation of RNase protected oligonucleotide shown in lane 4. Conversely, no protected fragment is observed after mixing of anti-luc PNA with HD RNA, either in unconjugated form (lane 3) or conjugated to mAb-SA vector (lane 5). BPB = bromophenol blue.
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